Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data
نویسندگان
چکیده
منابع مشابه
BS-SNPer: SNP calling in bisulfite-seq data
UNLABELLED Sodium bisulfite conversion followed by sequencing (BS-Seq, such as whole genome bisulfite sequencing or reduced representation bisulfite sequencing) has become popular for studying human epigenetic profiles. Identifying single nucleotide polymorphisms (SNPs) is important for quantification of methylation levels and for study of allele-specific epigenetic events such as imprinting. H...
متن کاملApplication Note BS-SNPer: SNP calling in Bisulfite-seq data
Summary: Sodium bisulfite conversion followed by sequencing (BSSeq, such as whole genome bisulfite sequencing or reduced representation bisulfite sequencing) has become popular for studying human epigenetic profiles. Identifying single nucleotide polymorphisms (SNPs) is important for quantification of methylation levels and for study of allele-specific epigenetic events such as imprinting. Howe...
متن کاملM3: an improved SNP calling algorithm for Illumina BeadArray data
SUMMARY Genotype calling from high-throughput platforms such as Illumina and Affymetrix is a critical step in data processing, so that accurate information on genetic variants can be obtained for phenotype-genotype association studies. A number of algorithms have been developed to infer genotypes from data generated through the Illumina BeadStation platform, including GenCall, GenoSNP, Illuminu...
متن کاملSmarter clustering methods for SNP genotype calling
MOTIVATION Most genotyping technologies for single nucleotide polymorphism (SNP) markers use standard clustering methods to 'call' the SNP genotypes. These methods are not always optimal in distinguishing the genotype clusters of a SNP because they do not take advantage of specific features of the genotype calling problem. In particular, when family data are available, pedigree information is i...
متن کاملHigh quality SNP calling using Illumina data at shallow coverage
MOTIVATION Detection of single nucleotide polymorphisms (SNPs) has been a major application in processing second generation sequencing (SGS) data. In principle, SNPs are called on single base differences between a reference genome and a sequence generated from SGS short reads of a sample genome. However, this exercise is far from trivial; several parameters related to sequencing quality, and/or...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Genome Biology
سال: 2012
ISSN: 1465-6906
DOI: 10.1186/gb-2012-13-7-r61